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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015790886.1_cds_XP_016504308.1_1683
CDS Infomation

[gene=LOC107822287] [db_xref=GeneID:107822287] [protein=vacuolar protein-sorting-associated protein 33 homolog] [protein_id=XP_016504308.1] [location=join(12191..12243,12328..12367,12479..12559,13891..14085,14179..14289,14380..14445,14565..14672,14773..14817,15616..15722,16074..16170,16325..16381,16666..16728,16813..16919,17719..17841,17954..18035,18130..18200,18369..18449,18821..18878,18993..19054,19803..19896,20203..20292)] [gbkey=CDS]
Sequence

ATGGCGCAAGTCCCCAATTTGGATAACGCTCCCATAAATCTGAAATCTCTGAGAGATCAA
TCACTGAAAGAACTGATTACGATTTTGAAGAACATTAGGGGGAAAAAGTGTTTGGTAATT
GATCCTAAGCTTGGCGGTTCACTCTCTCTTATTGTACAGAGCTCACTTCTCAAGGAGCAT
GGGGCTGAATTGAGGCATCTTAATGCGGAACCAGTTCAAACTGATTGCACGAAAGTAGTT
TATCTTGTCCGAGCTCAGCTTGACTTGATGAAGTTCATTTGCTCACACATCCATAATGAT
ATTTCTAAAGGGATTCAAAGGGAGTATTTTGTTTATTTTGTCCCTCGTCGTGCAGTTGTA
TGTGAGAAGATACTTGAGGAAGAAAAAGTTCATCACCTGTTGACTATAGGGGAGTATCCC
CTTTATCTTATTCCACTGGATGAGGATGTATTATCATTTGAAATTGATGTTGCTCACAAA
GAGTACCTAGTTGACGGGGACACTACCTCCCTGTGGCACATAGCAAAAGCTCTCCATAAA
ATCGAGTTTTCCTTTGGAGTGATTCCAAATGTGAGGGCCAAAGGGAAAGCATCAGTTCGC
GTTGCTGACATTTTGAATCGGATGCAATTGGAAGAACCTGTGAACACATCTGAGATGGGT
GTGCCTGAAATAAATACTATCATCCTCTTGGACAGAGAGGTGGATATGATCACTCCAATG
TGTTCGCAGTTAACATATGAAGGGCTGCTGGATGAGGTAAAAGTGATGTTCTTAGGATTG
CTATGGATCTGTATATTTAGGAAACCACGTTTTATTTCTCCGTTTGAAATATCAATTCAT
TACCTTTGTAGTGACAAGTTGTTCAAAGAGATACGGGACCAGAACTTTGAAGTTGTTGTC
CAGGTTCTACGTCAAAAAGCAACTTCCATGAAGCAAGATTACTCAGAGATGCAGACTACG
ACCCAGACAGTCTCCGAGTTGAAGGATTTTGTCAAAAAGCTGAACTCATTGCCGGAAATG
ACTAGACACATAAATCTTGCTCAGCATTTAACTACATTTACATCTAAACCTTCATTCCTT
GGCCGACTTGATATGGAGCAAACTCTTGTTGAGGCTGAAAGCTATGATATATGCTTTGAG
TACATTGAGGAGATGATCCATAAGCAAGAGCCACTTATCAATGTTCTACGTCTTCTTGTC
TTGTTCTCAATAACAAATTCAGGGTTGCCCAAGAAAAACTTTGACTATTTGAGGCGAGAA
CTGCTTCACAGCTATGGTTTTGAGCATATAGCAACCTTGAATAATTTGGAGAAGTCTGGA
TTGCTTAAGAAACAGGAGACTAAAAGCAATTGGATAACAATCAAACGTGCACTGCAGCTC
GTAGTGGAGGATATTGATACTTCCAATCCCAACGATATCTCCTATGTCTTCTCTGGGTAT
GCACCTCTCAGTATTCGCCTGGTTCAACATGCAATTCGATCTGGGTGGCGACCGATTGAA
GAAATATTGAAGTTGCTGCCGGGTCCACACTCAGATATTAAGAGGGGTGGATTTTCCAGC
AGTCCATCATTGGACACATTAAACGGGTCTTCGCATGGCTCGGACAAAGTTGTTGATGGA
AGGCGCTCTTTGGTTCTTGTTGTTTTCATTGGCGGAGTGACATCTGCAGAGATATCTGCT
CTTCGTTTCCTGAGCAGCCAGGAAGGGATGGCATATGACATAATTGTAGCAACTACAAAA
ATTATCAACGGAAGCACATTGACAGAAACATTTGTGGAGAAATTGGGATGA

Peptide Sequence

PEP ID

XP_016504308.1
PEP Infomation

PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Nicotiana tabacum]
Sequence

MAQVPNLDNAPINLKSLRDQSLKELITILKNIRGKKCLVIDPKLGGSLSLIVQSSLLKEH
GAELRHLNAEPVQTDCTKVVYLVRAQLDLMKFICSHIHNDISKGIQREYFVYFVPRRAVV
CEKILEEEKVHHLLTIGEYPLYLIPLDEDVLSFEIDVAHKEYLVDGDTTSLWHIAKALHK
IEFSFGVIPNVRAKGKASVRVADILNRMQLEEPVNTSEMGVPEINTIILLDREVDMITPM
CSQLTYEGLLDEVKVMFLGLLWICIFRKPRFISPFEISIHYLCSDKLFKEIRDQNFEVVV
QVLRQKATSMKQDYSEMQTTTQTVSELKDFVKKLNSLPEMTRHINLAQHLTTFTSKPSFL
GRLDMEQTLVEAESYDICFEYIEEMIHKQEPLINVLRLLVLFSITNSGLPKKNFDYLRRE
LLHSYGFEHIATLNNLEKSGLLKKQETKSNWITIKRALQLVVEDIDTSNPNDISYVFSGY
APLSIRLVQHAIRSGWRPIEEILKLLPGPHSDIKRGGFSSSPSLDTLNGSSHGSDKVVDG
RRSLVLVVFIGGVTSAEISALRFLSSQEGMAYDIIVATTKIINGSTLTETFVEKLG

Transcript Sequence

Gene sequence data has not been registered.